Index

C

calculate_midline() (in module pharedox.image_processing) calculate_midlines() (in module pharedox.image_processing)

center_and_rotate_pharynxes() (in module pharedox.image_processing) create_normed_rgb_ratio_stack() (in module pharedox.image_processing)

E

extract_largest_binary_object() (in module pharedox.image_processing)

G

get_area_of_largest_object() (in module pharedox.image_processing)

get_lr_bounds() (in module pharedox.image_processing)

M

measure_under_labels() (in module pharedox.image_processing) measure_under_midline() (in module pharedox.image_processing)

measure_under_midlines() (in module pharedox.image_processing) module pharedox.image_processing

N

normalize_images_by_wvl_pair() (in module pharedox.image_processing)

normalize_images_single_wvl() (in module pharedox.image_processing)

P

pharedox.image_processing module

R

rotate() (in module pharedox.image_processing)

S

segment_pharynx() (in module pharedox.image_processing) segment_pharynxes() (in module pharedox.image_processing)

shift() (in module pharedox.image_processing) subtract_medians() (in module pharedox.image_processing)

Z

z_normalize_with_masks() (in module pharedox.image_processing)